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Combined transcriptomic and proteomic analysis reveals a diversity of venom-related and toxin-like peptides expressed in the mat anemone Zoanthus natalensis (Cnidaria, Hexacorallia) Journal article
ARCHIVES OF TOXICOLOGY, 2019,Volume: 93,Issue: 6,Page: 1745-1767
Authors:  Qiwen Liao;  Guiyi Gong;  Terence C. W. Poon;  Irene L. Ang;  Kate M. K. Lei;  Shirley Weng In Siu;  Clarence Tsun Ting Wong;  Gandhi Rádis-Baptista;  Simon Ming-Yuen Lee
Favorite  |  View/Download:218/0  |  Submit date:2020/01/16
Cnidaria  Neuroprotection  Proteomic  Transcriptomic  Venom-derived Peptide  Zoantharian  
Chaos-embedded particle swarm optimization approach for protein-ligand docking and virtual screening Journal article
JOURNAL OF CHEMINFORMATICS, 2018,Volume: 10
Authors:  Tai, Hio Kuan;  Jusoh, Siti Azma;  Siu, Shirley W. I.
Favorite  |  View/Download:10/0  |  Submit date:2019/01/17
Docking  Virtual screening  PSOVina  Autodock Vina  Chaotic maps  Singer map  Sinusoidal map  
TNF Receptor Type II as an Emerging Drug Target for the Treatment of Cancer, Autoimmune Diseases, and Graft-Versus-Host Disease: Current Perspectives and In Silico Search for Small Molecule Binders Journal article
FRONTIERS IN IMMUNOLOGY, 2018,Volume: 9
Authors:  Shaikh, Faraz;  He, Jiang;  Bhadra, Pratiti;  Chen, Xin;  Siu, Shirley W., I
Favorite  |  View/Download:24/0  |  Submit date:2018/10/30
Tnf Receptor Type Ii  Tnf  Regulatory t Cells  Virtual Screening  Drug Discovery  Mm-pbsa  
A Novel ShK-Like Toxic Peptide from the Transcriptome of the Cnidarian Palythoa caribaeorum Displays Neuroprotection and Cardioprotection in Zebrafish Journal article
TOXINS, 2018,Volume: 10,Issue: 6
Authors:  Liao, Qiwen;  Gong, Guiyi;  Siu, Shirley Weng In;  Wong, Clarence Tsun Ting;  Yu, Huidong;  Tse, Yu Chung;  Radis-Baptista, Gandhi;  Lee, Simon Ming-Yuen
Favorite  |  View/Download:20/0  |  Submit date:2018/10/30
zoantharian  ShK-like peptide  dynamics simulation  voltage-gated K+ ion channel  calcium-activated K+ ion channel  animal toxins  
Adaptive Incremental Genetic Algorithm for Task Scheduling in Cloud Environments Journal article
SYMMETRY-BASEL, 2018,Volume: 10,Issue: 5
Authors:  Duan, Kairong;  Fong, Simon;  Siu, Shirley W. I.;  Song, Wei;  Guan, Steven Sheng-Uei
Favorite  |  View/Download:14/0  |  Submit date:2018/10/30
cloud computing  Infrastructure as a Service  genetic algorithm  task scheduling  
Novel Kunitz-like Peptides Discovered in the Zoanthid Palythoa caribaeorum through Transcriptome Sequencing Journal article
JOURNAL OF PROTEOME RESEARCH, 2018,Volume: 17,Issue: 2,Page: 891-902
Authors:  Liao, Qiwen;  Li, Shengnan;  Siu, Shirley Weng In;  Yang, Binrui;  Huang, Chen;  Chan, Judy Yuet-Wa;  Morlighem, Jean-Etienne R. L.;  Wong, Clarence Tsun Ting;  Radis-Baptista, Gandhi;  Lee, Simon Ming-Yuen
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soft coral  Transcriptome  Kunitz-like peptides  protein docking zebrafish  neurotoxin  zoanthids  
AmPEP: Sequence-based prediction of antimicrobial peptides using distribution patterns of amino acid properties and random forest Journal article
SCIENTIFIC REPORTS, 2018,Volume: 8
Authors:  Bhadra, Pratiti;  Yan, Jielu;  Li, Jinyan;  Fong, Simon;  Siu, Shirley W. I.
Favorite  |  View/Download:18/0  |  Submit date:2018/10/30
Comparison of Biomolecular Force Fields for Alkanethiol Self-Assembled Monolayer Simulations Journal article
JOURNAL OF PHYSICAL CHEMISTRY C, 2017,Volume: 121,Issue: 47,Page: 26340-26349
Authors:  Bhadra, Pratiti;  Siu, Shirley W. I.
Favorite  |  View/Download:5/0  |  Submit date:2018/10/30
TMDIM: an improved algorithm for the structure prediction of transmembrane domains of bitopic dimers Journal article
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2017,Volume: 31,Issue: 9,Page: 855-865
Authors:  Cao, Han;  Ng, Marcus C. K.;  Jusoh, Siti Azma;  Tai, Hio Kuan;  Siu, Shirley W. I.
Favorite  |  View/Download:7/0  |  Submit date:2018/10/30
Structure prediction  Bitopic dimer  Helix packing  Helix assembly  Scwrl4  Bioinformatics  
Exploring the behaviour of water nanodroplet on a coplanar electrowetting-on-dielectric: a molecular dynamics approach Journal article
MICRO & NANO LETTERS, 2017,Volume: 12,Issue: 7,Page: 486-489
Authors:  Chan, Hoi Kei;  Mak, Pui In;  Siu, Shirley W. I.
Favorite  |  View/Download:15/0  |  Submit date:2018/10/30
water  drops  wetting  molecular dynamics method  hydrogen bonds  contact angle  water nanodroplet  coplanar electrowetting-on-dielectric  molecular dynamics simulation  hydrophobic surface  applied electric field  open-plate coplanar electrodes system  electrode-induced field  contact angle  hydrogen bonding  diffusion coefficient  water molecules  hydration layer  water diffusion