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cSSMD: Assessing collective activity for addressing off-target effects in genome-scale RNA interference screens Journal article
Bioinformatics, 2011,Volume: 27,Issue: 20,Page: 2775-2781
Authors:  Zhang X.D.;  Santini F.;  Lacson R.;  Marine S.D.;  Wu Q.;  Benetti L.;  Yang R.;  McCampbell A.;  Berger J.P.;  Toolan D.M.;  Stec E.M.;  Holder D.J.;  Soper K.A.;  Heyse J.F.;  Ferrer M.
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The use of SSMD-based false discovery and false nondiscovery rates in genome-scale RNAi screens Journal article
Journal of Biomolecular Screening, 2010,Volume: 15,Issue: 9,Page: 1123-1131
Authors:  Zhang X.D.;  Lacson R.;  Yang R.;  Marine S.D.;  McCampbell A.;  Toolan D.M.;  Hare T.R.;  Kajdas J.;  Berger J.P.;  Holder D.J.;  Heyse J.F.;  Ferrer M.
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-value  false discovery rate  false nondiscovery rate  high-throughput screening  p  q  RNAi  
Hit selection with false discovery rate control in genome-scale RNAi screens Journal article
Nucleic Acids Research, 2008,Volume: 36,Issue: 14,Page: 4667-4679
Authors:  Zhang X.D.;  Kuan P.F.;  Ferrer M.;  Shu X.;  Liu Y.C.;  Gates A.T.;  Kunapuli P.;  Stec E.M.;  Xu M.;  Marine S.D.;  Holder D.J.;  Strulovici B.;  Heyse J.F.;  Espeseth A.S.
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Integrating experimental and analytic approaches to improve data quality in genome-wide RNAi screens Journal article
Journal of Biomolecular Screening, 2008,Volume: 13,Issue: 5,Page: 378-389
Authors:  Zhang X.D.;  Espeseth A.S.;  Johnson E.N.;  Chin J.;  Gates A.;  Mitnaul L.J.;  Marine S.D.;  Tian J.;  Stec E.M.;  Kunapuli P.;  Holder D.J.;  Heyse J.F.;  Strulovici B.;  Ferrer M.
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Plate design  Quality control  RNAi high-throughput screening  Strictly standardized mean difference  Z factor  
The use of strictly standardized mean difference for hit selection in primary RNA interference high-throughput screening experiments Journal article
Journal of Biomolecular Screening, 2007,Volume: 12,Issue: 4,Page: 497-509
Authors:  Zhang X.D.;  Ferrer M.;  Espeseth A.S.;  Marine S.D.;  Stec E.M.;  Crackower M.A.;  Holder D.J.;  Heyse J.F.;  Strulovici B.
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d+-probability  High-throughput Screening  Hit Rate Point  Restricted False-positive Rate  Strictly Standardized Mean Difference  
Robust statistical methods for hit selection RNA interference high-throughput screening experiments Journal article
Pharmacogenomics, 2006,Volume: 7,Issue: 3,Page: 299-309
Authors:  Zhang X.D.;  Yang X.C.;  Chung N.;  Gates A.;  Stec E.;  Kunapuli P.;  Holder D.J.;  Ferner M.;  Espeseth A.S.
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Experimentwise  High-throughput screening  Hit selection  Median  Median absolute deviation  Plate-well series plot  Platewise  Quartile-based method  RNA interference  Statistical methods