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| Pathway-based analysis of genome-wide siRNA screens reveals the regulatory landscape of app processing Journal article
PLoS ONE, 2015,Volume: 10,Issue: 2
Authors: Camargo L.M.; Zhang X.D. ; Loerch P.; Caceres R.M.; Marine S.D.; Uva P.; Ferrer M.; De Rinaldis E.; Stone D.J.; Majercak J.; Ray W.J.; Chen Y.-A.; Shearman M.S.; Mizuguchi K.
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| Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes Journal article
Cell Metabolism, 2012,Volume: 16,Issue: 4,Page: 435-448
Authors: Moran I.; Akerman I.; Van De Bunt M.; Xie R.; Benazra M.; Nammo T.; Arnes L.; Nakic N.; Garcia-Hurtado J.; Rodriguez-Segui S.; Pasquali L.; Sauty-Colace C.; Beucher A.; Scharfmann R.; Van Arensbergen J.; Johnson P.R.; Berry A.; Lee C.; Harkins T.; Gmyr V.; Pattou F.; Kerr-Conte J.; Piemonti L.; Berney T.; Hanley N.; Gloyn A.L.; Sussel L.; Langman L.; Brayman K.L.; Sander M.; McCarthy M.I.; Ravassard P.; Ferrer J.
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| A genome-wide siRNA screen to identify modulators of insulin sensitivity and gluconeogenesis Journal article
PLoS ONE, 2012,Volume: 7,Issue: 5
Authors: Yang R.; Lacson R.G.; Castriota G.; Zhang X.D.; Liu Y.; Zhao W.; Einstein M.; Camargo L.M.; Qureshi S.; Wong K.K.; Zhang B.B.; Ferrer M.; Berger J.P.
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| cSSMD: Assessing collective activity for addressing off-target effects in genome-scale RNA interference screens Journal article
Bioinformatics, 2011,Volume: 27,Issue: 20,Page: 2775-2781
Authors: Zhang X.D.; Santini F.; Lacson R.; Marine S.D.; Wu Q.; Benetti L.; Yang R.; McCampbell A.; Berger J.P.; Toolan D.M.; Stec E.M.; Holder D.J.; Soper K.A.; Heyse J.F.; Ferrer M.
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| The use of SSMD-based false discovery and false nondiscovery rates in genome-scale RNAi screens Journal article
Journal of Biomolecular Screening, 2010,Volume: 15,Issue: 9,Page: 1123-1131
Authors: Zhang X.D.; Lacson R.; Yang R.; Marine S.D.; McCampbell A.; Toolan D.M.; Hare T.R.; Kajdas J.; Berger J.P.; Holder D.J.; Heyse J.F.; Ferrer M.
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-value false discovery rate false nondiscovery rate high-throughput screening p q RNAi |
| Inhibition of calcineurin-mediated endocytosis and α-amino-3-hydroxy- 5-methyl-4-isoxazolepropionic acid (AMPA) receptors prevents amyloid β oligomer-induced synaptic disruption Journal article
Journal of Biological Chemistry, 2010,Volume: 285,Issue: 10,Page: 7619-7632
Authors: Zhao W.-Q.; Santini F.; Breese R.; Ross D.; Zhang X.D.; Stone D.J.; Ferrer M.; Townsend M.; Wolfe A.L.; Seager M.A.; Kinney G.G.; Shughrue P.J.; Ray W.J.
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| A lentivirus-mediated genetic screen identifies dihydrofolate reductase (DHFR) as a modulator of β-catenin/GSK3 signaling Journal article
PLoS ONE, 2009,Volume: 4,Issue: 9
Authors: Klinghoffer R.A.; Frazier J.; Annis J.; Berndt J.D.; Roberts B.S.; Arthur W.T.; Lacson R.; Zhang X.D.; Ferrer M.; Moon R.T.; Cleary M.A.
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| Error rates and powers in genome-scale RNAi screens Journal article
Journal of Biomolecular Screening, 2009,Volume: 14,Issue: 3,Page: 230-238
Authors: Zhang X.D.; Marine S.D.; Ferrer M.
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False-negative rate Power Restricted false-positive rate Strictly standardized mean difference Type I error Type II error |
| Genome-Scale RNAi Screen for Host Factors Required for HIV Replication Journal article
Cell Host and Microbe, 2008,Volume: 4,Issue: 5,Page: 495-504
Authors: Zhou H.; Xu M.; Huang Q.; Gates A.T.; Zhang X.D.; Castle J.C.; Stec E.; Ferrer M.; Strulovici B.; Hazuda D.J.; Espeseth A.S.
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CELLBIO MICROBIO SYSBIO |
| Hit selection with false discovery rate control in genome-scale RNAi screens Journal article
Nucleic Acids Research, 2008,Volume: 36,Issue: 14,Page: 4667-4679
Authors: Zhang X.D.; Kuan P.F.; Ferrer M.; Shu X.; Liu Y.C.; Gates A.T.; Kunapuli P.; Stec E.M.; Xu M.; Marine S.D.; Holder D.J.; Strulovici B.; Heyse J.F.; Espeseth A.S.
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