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Pathway-based analysis of genome-wide siRNA screens reveals the regulatory landscape of app processing Journal article
PLoS ONE, 2015,Volume: 10,Issue: 2
Authors:  Camargo L.M.;  Zhang X.D.;  Loerch P.;  Caceres R.M.;  Marine S.D.;  Uva P.;  Ferrer M.;  De Rinaldis E.;  Stone D.J.;  Majercak J.;  Ray W.J.;  Chen Y.-A.;  Shearman M.S.;  Mizuguchi K.
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Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes Journal article
Cell Metabolism, 2012,Volume: 16,Issue: 4,Page: 435-448
Authors:  Moran I.;  Akerman I.;  Van De Bunt M.;  Xie R.;  Benazra M.;  Nammo T.;  Arnes L.;  Nakic N.;  Garcia-Hurtado J.;  Rodriguez-Segui S.;  Pasquali L.;  Sauty-Colace C.;  Beucher A.;  Scharfmann R.;  Van Arensbergen J.;  Johnson P.R.;  Berry A.;  Lee C.;  Harkins T.;  Gmyr V.;  Pattou F.;  Kerr-Conte J.;  Piemonti L.;  Berney T.;  Hanley N.;  Gloyn A.L.;  Sussel L.;  Langman L.;  Brayman K.L.;  Sander M.;  McCarthy M.I.;  Ravassard P.;  Ferrer J.
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A genome-wide siRNA screen to identify modulators of insulin sensitivity and gluconeogenesis Journal article
PLoS ONE, 2012,Volume: 7,Issue: 5
Authors:  Yang R.;  Lacson R.G.;  Castriota G.;  Zhang X.D.;  Liu Y.;  Zhao W.;  Einstein M.;  Camargo L.M.;  Qureshi S.;  Wong K.K.;  Zhang B.B.;  Ferrer M.;  Berger J.P.
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cSSMD: Assessing collective activity for addressing off-target effects in genome-scale RNA interference screens Journal article
Bioinformatics, 2011,Volume: 27,Issue: 20,Page: 2775-2781
Authors:  Zhang X.D.;  Santini F.;  Lacson R.;  Marine S.D.;  Wu Q.;  Benetti L.;  Yang R.;  McCampbell A.;  Berger J.P.;  Toolan D.M.;  Stec E.M.;  Holder D.J.;  Soper K.A.;  Heyse J.F.;  Ferrer M.
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The use of SSMD-based false discovery and false nondiscovery rates in genome-scale RNAi screens Journal article
Journal of Biomolecular Screening, 2010,Volume: 15,Issue: 9,Page: 1123-1131
Authors:  Zhang X.D.;  Lacson R.;  Yang R.;  Marine S.D.;  McCampbell A.;  Toolan D.M.;  Hare T.R.;  Kajdas J.;  Berger J.P.;  Holder D.J.;  Heyse J.F.;  Ferrer M.
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-value  false discovery rate  false nondiscovery rate  high-throughput screening  p  q  RNAi  
Inhibition of calcineurin-mediated endocytosis and α-amino-3-hydroxy- 5-methyl-4-isoxazolepropionic acid (AMPA) receptors prevents amyloid β oligomer-induced synaptic disruption Journal article
Journal of Biological Chemistry, 2010,Volume: 285,Issue: 10,Page: 7619-7632
Authors:  Zhao W.-Q.;  Santini F.;  Breese R.;  Ross D.;  Zhang X.D.;  Stone D.J.;  Ferrer M.;  Townsend M.;  Wolfe A.L.;  Seager M.A.;  Kinney G.G.;  Shughrue P.J.;  Ray W.J.
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A lentivirus-mediated genetic screen identifies dihydrofolate reductase (DHFR) as a modulator of β-catenin/GSK3 signaling Journal article
PLoS ONE, 2009,Volume: 4,Issue: 9
Authors:  Klinghoffer R.A.;  Frazier J.;  Annis J.;  Berndt J.D.;  Roberts B.S.;  Arthur W.T.;  Lacson R.;  Zhang X.D.;  Ferrer M.;  Moon R.T.;  Cleary M.A.
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Error rates and powers in genome-scale RNAi screens Journal article
Journal of Biomolecular Screening, 2009,Volume: 14,Issue: 3,Page: 230-238
Authors:  Zhang X.D.;  Marine S.D.;  Ferrer M.
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False-negative rate  Power  Restricted false-positive rate  Strictly standardized mean difference  Type I error  Type II error  
Genome-Scale RNAi Screen for Host Factors Required for HIV Replication Journal article
Cell Host and Microbe, 2008,Volume: 4,Issue: 5,Page: 495-504
Authors:  Zhou H.;  Xu M.;  Huang Q.;  Gates A.T.;  Zhang X.D.;  Castle J.C.;  Stec E.;  Ferrer M.;  Strulovici B.;  Hazuda D.J.;  Espeseth A.S.
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CELLBIO  MICROBIO  SYSBIO  
Hit selection with false discovery rate control in genome-scale RNAi screens Journal article
Nucleic Acids Research, 2008,Volume: 36,Issue: 14,Page: 4667-4679
Authors:  Zhang X.D.;  Kuan P.F.;  Ferrer M.;  Shu X.;  Liu Y.C.;  Gates A.T.;  Kunapuli P.;  Stec E.M.;  Xu M.;  Marine S.D.;  Holder D.J.;  Strulovici B.;  Heyse J.F.;  Espeseth A.S.
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