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Protein Sequence Analysis based on Fractal-Wavelet Scheme
Lina Yang; Yuan Yan Tang; Yang Lu; Huiwu Luo; Yulong Wang; Haoliang Yuan
2014
Conference Name2014 IEEE International Conference on Systems, Man, and Cybernetics (SMC)
Source PublicationConference Proceedings - IEEE International Conference on Systems, Man and Cybernetics
Volume2014-January
IssueJanuary
Pages4065-4070
Conference Date5-8 Oct. 2014
Conference PlaceSan Diego, CA
CountryUSA
PublisherIEEE
Abstract

It is a significant issue to find similar proteins from a large scale of protein database efficiently. This paper presents a new algorithm of protein sequence which is based on fractal dimension and wavelet transform. A hybrid method consisting fractal dimension calculation, discrete wavelet transform and sliding window are applied to generate a new encoding feature. Through the computation between the feature vectors, we can obtain the distance matrix and the phylogenic tree can be constructed.We apply this approach by analyzing the ND5 (NADH dehydrogenase subunit 5) protein dataset. The experimental results show that the proposed model is more accurate than the existing ones such as Su's model, Zhang's model and Yao's model, and it is consistent with the result generated from MEGA software and some known facts.

DOIhttps://doi.org/10.1109/SMC.2014.6974569
URLView the original
Indexed BySCI
Language英语
WOS Research AreaComputer Science
WOS SubjectComputer Science, Artificial Intelligence ; Computer Science, Cybernetics ; Computer Science, Information Systems
WOS IDWOS:000370963704034
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Cited Times [WOS]:0   [WOS Record]     [Related Records in WOS]
Document TypeConference paper
CollectionDEPARTMENT OF COMPUTER AND INFORMATION SCIENCE
AffiliationDepartment of Computer and Information Science Faculty of Science and Technology University of Macau Macau, 999078, China
First Author AffilicationFaculty of Science and Technology
Recommended Citation
GB/T 7714
Lina Yang,Yuan Yan Tang,Yang Lu,et al. Protein Sequence Analysis based on Fractal-Wavelet Scheme[C]:IEEE,2014:4065-4070.
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